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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.5.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FT.3.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.4.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HS.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.73NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LU.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LF.3.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.16.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
ML.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
MM.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
LB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.3.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.7.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.15NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KP.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.20.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.110NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.86.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GN.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.8.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.10.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.89NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HR.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used