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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
EZ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.8.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.32NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GD.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBZNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BR.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.79NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.25.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.13.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBC.1.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EN.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.14NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
DV.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.11.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GJ.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HJ.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.101NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.31NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.4.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FP.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FG.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.56NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.1.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GA.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.67NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.88NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used