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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
N.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.319NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BG.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JF.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.572NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Q.3 (Alpha)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.523NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.116 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.38 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.595.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.340NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.437NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.452NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.400NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.25NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.2.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.16 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.46.1 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.37 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.336NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.317NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.397NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GY.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HW.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.46NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GB.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.72NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.1.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FE.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.1.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.1.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HH.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.29NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.3.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.8NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.24NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.20NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.5.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used