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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.40NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.367NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
GK.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BN.1.3.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.385NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.45NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.244NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JD.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EP.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.17.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EG.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.7.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.10.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FD.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
KG.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.13NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HA.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.351 (Beta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.36NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HZ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.30NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.19.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.100NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.16.19NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.43.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EU.1.1.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.5.18NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FZ.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.497NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EN.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.30 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.85 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.6.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.21NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FK.1.3.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBFNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.5.6NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.11.5NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBF.7.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FY.5.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FP.2.1.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
FL.2.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JW.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JL.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.571NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.55 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used