Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
HK.3.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.5.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.1.36.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.86.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XDFSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.575.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.620SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.2.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XDMSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
LV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.311SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.93SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.104SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.225SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.309SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.105SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.307SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.171SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.67SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.279SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AD.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.201SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
V.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.149SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.413SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.9.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.107SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used