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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.407SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.12.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.22 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.128SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.405SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.296SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.412SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AC.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.421SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.364SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.82SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.61SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.251SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.3.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EF.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EK.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DV.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.23.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.64SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.68SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.65 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.466SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
L.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.339SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.229SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.415SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.370SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.421SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.428.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.612SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.1.2.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1.11.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.32.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.8.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HC.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBLSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used