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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
GK.1.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.8.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XESWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XCVSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.50SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.78SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HR.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HS.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HU.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HV.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GP.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.3.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.277SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.294SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.81SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HV.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.2.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.3.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FG.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GN.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.1.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.413SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.5.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JD.1.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.268SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.409SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FG.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CD.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DE.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.6.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.86 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.7 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.12 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.7.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.390SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used