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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.474SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.297SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AH.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.280SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.597SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.72SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.85SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.66 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.72 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.133 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.5.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.7 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.33.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.493SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.351.2 (Beta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.640.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.352SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.251SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FZ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.595.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.495SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.294SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.453SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.44SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.350SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.304SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.315SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.516SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.354SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.162SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.426SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.402SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.424SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.61SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.264SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.581SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.330SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.205SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.177SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.301SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.308SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.210SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.325SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.590SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.116SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.496SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.438.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.49 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used