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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.4.2.5 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XFSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
S.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.221.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.215SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.82SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.462SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.218SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.74SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AP.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.98.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.13.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.34.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.124.1.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.203SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.7.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.254SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.36.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.122.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AQ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.209SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.236SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XQSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.59SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.395SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.416.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.532SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.408SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XHSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.550SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.261SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.3.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EP.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.15.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XCBSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.15.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XSSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.74SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used