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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.4.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.181SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.6.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.4.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.3.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
ED.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CQ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CH.1.1.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.38.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.19.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.214SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.284SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.351.3 (Beta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.318SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
R.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
ML.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.283SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.96SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
L.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.38.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BT.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.55SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.76SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BE.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.4.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.6.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used