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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.133SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.466SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.489SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.363SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.95SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.531SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.200SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.299SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.55SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.300SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.179SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.125SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
G.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.438SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.178SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.208SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.8 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.8.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.123SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.143SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.46.6.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.112.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.360SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.49SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.347SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.195SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.321SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.379SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.78SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.231SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.49SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.67SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.190SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.120SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AM.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.249SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used