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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.11 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.428SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.355SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.34.1.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.71 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.33.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.465SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.2.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
S.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.258.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.215SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.462SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.218SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.74SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.98.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.34.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.124.1.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.203SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.8.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.254SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.36.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.79 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.209SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.236SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.395SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.120.2.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.416.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.532SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.408SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.550SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.261SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.3.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EP.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used