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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FY.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FG.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.56SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.67SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.88SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.48SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ED.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CQ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.38.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.19.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.214SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.284SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351.3 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.318SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
R.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.29 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ML.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.283SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.96SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
L.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XATSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used