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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.166SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.99.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KT.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.334SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.359SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.302SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.222SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.434SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.467SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.110.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.23 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.9 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.74 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HE.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.99SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FE.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GM.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.34.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.106SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FE.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.3.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.73SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used