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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FL.1.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.86 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.7 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.12 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.390SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.319SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BG.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.572SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.397SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.3 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.523SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.116 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.38 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.595.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.340SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.437SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.452SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.400SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.16 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.37 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.336SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.317SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.397SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HE.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.27.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XESWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCVSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.31.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.78SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HR.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used