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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBL.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.56SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FR.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDDSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.2 (Zeta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.499SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.212SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.61SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.41.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JF.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.18.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.23.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.21.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used