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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
JN.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JQ.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LN.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.25.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.16.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.57.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.44.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.623SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.214.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.588SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.210SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.567SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.541SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.24SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.189SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.563SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.258SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.426SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.399SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.337SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.539SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.164SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KY.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.392SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.377SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FR.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used