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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.92 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.101 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.57SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.49SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.529 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.41.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.33 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.99.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KB.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.39.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.58.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.7.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.16.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.11.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.32.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used