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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.95 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.189SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.545SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.482SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JC.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.564SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.461SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.486SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.603SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.606SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.601SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.186SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.324SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.322SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.416SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.239SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.375SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.432SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.241SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.298SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.433SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.561SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.605SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.596SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
W.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.565SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.361SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.101SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.478SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.86SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.543SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.139SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.362SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.265SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.585SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.351SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used