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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.408SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.256SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.7 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.460SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.262SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.351.5 (Beta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.9.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JB.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.30.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.68SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.256SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.77SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.248SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.559SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.406SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ER.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.640SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.43.9 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.3 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.372SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.425SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.144SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used