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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.66SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.58.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.8.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDD.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDNSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.8.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LV.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.54.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.30.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LE.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LH.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.55.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.18.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4 (Omicron)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LP.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used