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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
KP.2.13EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XDP.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HN.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
KL.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HK.24.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.2.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.1.5.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HE.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JM.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HV.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
KK.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FY.1.4.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JN.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JG.3.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HK.27.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HV.1.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.1.11EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.8.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GK.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XEEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XCVEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.31.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.50EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.78EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.43EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HR.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HK.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HS.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HH.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HU.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HV.1.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.11EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BQ.1.1.27EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.7.22EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
GP.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBB.3.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XBVEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XDCEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.15.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JR.1.1.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JD.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
JG.3.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
KE.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HV.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.2.86.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HK.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
HK.26.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
XCPEWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FL.1.8EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
EG.6.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used