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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.262NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBUNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.351.5 (Beta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FZ.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.9.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBC.1.6.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.4.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FQ.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
JB.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.3.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FZ.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DV.7.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.30.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.68NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CD.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.122.3 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.5.55NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
HH.8.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.19NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FM.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FK.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.7.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.8.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EU.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.14NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.21NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EJ.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BM.1.1.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.123.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.9.2.2 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EW.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBF.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.1.37NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BN.1.4.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EW.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CH.1.1.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.8NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBF.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBPNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CH.1.1.22NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.36NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.1.37NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBB.2.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.21NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BN.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.132 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.160.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used