Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
AY.11 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.428NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.355NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.34.1.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.71 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.33.2 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.52NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.465NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.160.33NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.4.2.5 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XFNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
S.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.221.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.258.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.215NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.36.20NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.82NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.462NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.218NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.35NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
A.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.422NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.56NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.4.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.198NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.366NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.441NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.416NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.63NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.263NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.135NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FK.1.4.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.13NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DR.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.160.15NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.219NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
N.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.208NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.125.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.78 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.159NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.43.5 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBC.1.6.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FP.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.2.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CA.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BM.6NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used