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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.160.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.71NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.445NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.12NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.75.3 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.35NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CY.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FR.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBJ.4NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CP.7NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GJ.1.2.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CK.1.1.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.56.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.7.21NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.7.13.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BF.37NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CK.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
CM.5NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XBC.1.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
JN.11.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
XDLNCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
JN.17NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.29.1 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AY.29.2 (Delta)NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BC.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.10.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.3.13NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.3.9NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.56NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.29NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.2.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BY.1.1.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
DK.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BQ.1.11.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
BA.5.2.63NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FM.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GA.4.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GK.1.10.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
EG.10NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GN.1.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
FL.13.3.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
GW.3NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.424NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.177.64NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AH.1NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.327NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.396NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
B.1.1.129NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
AK.2NCorman-NCACATTGGCACCCGCAATC1957.892870628724F-23131.5Germany
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used