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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBC.1.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CM.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BW.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.10.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
FW.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CH.1.1.29EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.55EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.14EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CA.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BM.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.2.46EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BA.5.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CU.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
CA.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.83EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.40EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.160.27EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.4.2.4 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.161EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.58EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.75EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.411EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.217EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.35EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.17 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.41EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.527EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
C.18EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.500EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.147EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.487EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.177.68EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.121EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AA.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AS.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.115EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.127.1 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.88EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.35EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
A.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.422EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.56EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.7EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.198EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.366EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.441EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.416EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.63EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used