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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.1.2EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.36EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.12EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.5.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BQ.1.18EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
BF.5.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.310EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.185EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.258.9EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.329EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.229EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.342EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.90EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.169EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.53EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.1EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.528EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.175EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6.3EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.483EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.181EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.113EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.594EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.328EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.13EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.145EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.547EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.247EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.205EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.110EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.434EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.4.5EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.181EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.6.6EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.37EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.290EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.341EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.161EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
AY.69 (Delta)EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.139EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.508EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.94EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.463EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.357EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.318EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.557EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.119EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
B.1.1.160EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
D.4EWon-ECACACAATCGATGCGCAGTA20502636526346R-19261.4South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used