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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FL.15.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HE.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.99SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FE.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GM.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.34.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.106SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FE.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.3.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.4.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.73SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LU.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.16.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LW.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
ML.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LB.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MM.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.7.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KP.2.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used