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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GR.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.568SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.13 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.372SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.634SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.37.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.630SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.360SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.578SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.544SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.448SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.425SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.354SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.503SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDDSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.2 (Zeta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.499SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.212SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.61SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.41.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JF.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.28SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBBSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used