Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.41.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.24.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.20.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.19.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JG.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JR.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.58.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.5.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.53.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDQ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.9.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.47.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.51SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KZ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used