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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
HN.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.6.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FD.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCLSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCTSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.86.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDD.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HW.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GE.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JF.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JE.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.1.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCWSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.2.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.36SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.108SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.104SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HH.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GW.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JE.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DV.7.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GN.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JH.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.1.2.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HN.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.10.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used