Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.9.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.16.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.76SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.43SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.107SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LF.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.39SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.172SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.110SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.320SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.91SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.55.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LQ.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
MD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDKSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.120 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDK.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
LL.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.121 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.14 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.119 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.114 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.54 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.64 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.4 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.107 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.81 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.117 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.118 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.27 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.617.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.67 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.110 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used