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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.400SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.16 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.46.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.37 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.336SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.317SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.397SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.3.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCYSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EF.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BU.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.34SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CJ.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.3.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EE.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.72SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBJ.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.14SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.2.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.277SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.294SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.81SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HV.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.2.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FG.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GN.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.413SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.5.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used