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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.65SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DT.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DU.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.53SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CV.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBKSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.14.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBK.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DF.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CK.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.42SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.69SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.70SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.4.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used