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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.277SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.28 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.272SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.371SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.353SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.407SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AA.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.13SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.182SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.218SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.12.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.22 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.128SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.405SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.296SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.412SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.27SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.421SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.364SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.61SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.251SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.132 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.17SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.83SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BJ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KD.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XCSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.7.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.15.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.40SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CR.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KB.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GK.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CJ.1.3.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used