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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.2.63SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.4.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.8.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EC.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XLSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.87 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.23.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XNSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.111 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BM.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CG.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CE.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EA.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DH.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.54SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
N.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.15 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.348SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.575SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.4 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.442SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.1 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.2.5.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.600SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.12 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.525 (Eta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.6 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.7 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.24 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.45 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.70 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.26.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.5 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used