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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BA.5.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GA.4.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
HK.3.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.73 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.60 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.124.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GS.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.13.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GJ.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XYSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.5.2.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GP.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FL.4.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.90 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.87SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.46SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.58 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CP.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBGSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.98 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CQ.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EC.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.213SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.341SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.89SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.23SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.315SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.204SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.50SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.170SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used