Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.440SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.25SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.23.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.104 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.198SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EG.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAFSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
P.1.17.1 (Gamma)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.16SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.41SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.375SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.75.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.78SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.9.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.64SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.221.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DP.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.62SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.82SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.20SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.22SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.38.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.79.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.47SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.7.18SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BY.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EA.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XJSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BR.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.8SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.5.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.8.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBSSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JN.2.2.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
KE.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FY.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.56SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
JD.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XDTSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used