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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
CL.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.8.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAUSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.25.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XADSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XABSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FT.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XALSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBWSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.7SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.19SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAY.1.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.10.4SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.1.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.60SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.9.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.3.15SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.6.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.1.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.45SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.31SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.160.26SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.1.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.4.15 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.75.10SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.134SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.39.1.3 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.38SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Q.2 (Alpha)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BL.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
M.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
C.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.82 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
A.30SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.35SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.23.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.466.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.213SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.626SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used