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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
FY.8.1.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GY.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.7.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.254SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.36.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.36.12SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.21SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.122.2 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.79 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AQ.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.209SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.236SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.2.33SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XQSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.177.59SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.395SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
AY.120.2.1 (Delta)SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.416.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.532SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.408SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XHSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
EE.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.52SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.9SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BN.1.4.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DS.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BA.5.2.32SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BQ.1.1.58SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.631SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.627SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.519SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.1.1.514SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
GT.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.5.87SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XAPSWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BE.1.4.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.2.6.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBB.1.47.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBF.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CF.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.11SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DN.3.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
DJ.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
XBC.1.5SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CM.6SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BW.1.2SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
BF.10.1SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
FW.3SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
CH.1.1.29SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
B.55SWon-SCACCTGTGCCTGTTAAACCA20502321323194R-21965.9South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used