Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.2.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.39.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.233SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.320SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.635SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.19 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AM.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.113SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.5.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CA.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BM.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.46SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CA.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.161SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.58SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.411SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.217SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.17 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.41SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.147SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.487SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.121SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AA.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.115SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.127.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AP.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.98.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.13.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.34.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.124.1.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.203SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.7.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.254SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.36.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.122.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AQ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used