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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.46SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBC.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.17.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.562SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.219SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
N.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XASWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.114SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.199SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.11.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.2.63SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GA.4.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1.10.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GN.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.13.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GW.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.64SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AH.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.396SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.129SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AK.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.221.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.224SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.618SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.458SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AG.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.264.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.237SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBNSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.356SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.462SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.147SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.6 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.5 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
P.1.4 (Gamma)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.420SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used