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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.474SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.14SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.297SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AH.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.280SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.597SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.72SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.85SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.66 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.72 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.133 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.5.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.43.7 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.33.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.493SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.351.2 (Beta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.640.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.352SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.251SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FZ.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GW.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.367SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.1.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.3.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.244SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JD.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.7.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FD.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KG.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.351 (Beta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.19.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.100SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.19SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.43.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.15.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.32SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.13 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.358SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.28SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used