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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.304SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.315SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.516SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.354SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.162SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.426SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.402SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.424SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.61SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.264SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.581SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.330SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.205SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.177SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.301SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.308SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.210SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.325SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.590SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.116SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.496SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.438.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.49 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.48SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EK.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.66SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.21.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.39SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EE.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DV.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
ES.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.371SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.6.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HU.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.1.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KJ.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JC.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.625SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HD.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.507SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.273SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.211SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used