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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
BN.1.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.10.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.9.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.76SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.43SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.93SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.2.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.5.1.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.13.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.1.2.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.14.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.3.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DY.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EM.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FD.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GF.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.5.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FU.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.310SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.185SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.9SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.329SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.229SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.342SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.90SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.169SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.53SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.4.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.528SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.175SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.6.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.483SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.181SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.113SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.594SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used