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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
EG.5.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HK.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.5.1.17SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.623SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.214.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.588SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.210SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.28SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.567SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.541SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.24SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.189SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.563SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.258SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.426SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.399SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.337SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.539SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.54SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.164SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KY.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.392SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.377SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.5.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BB.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EG.5.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.3.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FR.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FL.4.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FR.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FU.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBL.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FE.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.16.13SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FR.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GY.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used