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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.234SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Z.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
V.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.131SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.274SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.25SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.235SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.65SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.165SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KC.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KL.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
HC.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.507SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.54SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.196SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.6SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.34SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.459SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.117SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.381SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.237SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.382SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.395SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.37SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.61SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.40SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.153SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.33SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.62SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.391SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.448SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Q.1 (Alpha)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.46 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.99 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.243SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
R.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.216SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.471SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.420SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
L.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.518SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.551SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used