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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.36.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.41 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.71SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AS.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.142SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.166SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.50SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.60SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.52SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.250SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.63SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.27SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.23SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.130SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.44SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.469SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.311SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.93SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.104SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.258.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.225SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AV.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.309SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.105SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.11SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.307SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.171SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.16SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.57SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.67SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.279SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.12SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.1.7SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AD.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.201SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
W.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
GK.2.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JN.2.2.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JC.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
KE.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
FY.8.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
JD.1.1.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used