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Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
XBB.1.45SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.31SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.160.26SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.39.1.2 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.4.15 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.75.10SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.21SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.1.134SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.39.1.3 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.38SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBC.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Q.2 (Alpha)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
M.3SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
C.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.82 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
A.30SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.36.35SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.23.1 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.466.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.213SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBHSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.78SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.9.4SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.64SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBC.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.221.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
DP.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BL.1.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BN.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
B.1.177.62SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.82SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.20SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.3.22SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.38.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.2.79.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBB.1.47SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BF.7.18SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XAY.1.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BQ.1.1.55SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BY.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
EA.2SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XJSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BR.5SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBF.8SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
BA.5.1.29SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.5.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
CM.8.1.1SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
XBSSWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
AY.56 (Delta)SWon-SCTACATGCACCAGCAACTGT20502311423133F-22142.8South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used