Browse
Prediction results retrieved after performance evaluation of WHO approved 34 primers to estimate their binding affinities for 3892 SARS-CoV-2 variants.

Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used
  
B.1.1.218NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.1.12.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.11NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AY.22 (Delta)NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.128NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.36.33NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.405NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.296NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.412NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
AC.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
C.27NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.421NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.364NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.82NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.61NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.177.47NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.38NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.251NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
A.2.3NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.4.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.59NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BR.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BQ.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CM.5.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBDNWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
EB.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CN.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.17NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BG.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BF.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.4.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.576NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.325NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.22NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.521NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.378NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.206NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.28NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
B.1.1.77NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
JN.1.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HK.13.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
HV.1.9NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBB.2.3.16NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BM.2.1NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
XBENWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BE.1.4.2NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.12NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
BA.2.3.4NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
CH.1.1.7NWon-NCAATGCTGCAATCGTGCTAC20502873228751F-22388.1South Korea
Lineage
(WHO label)
  
Target Gene
  
Primer Name
  
Primer Sequence
  
Primer Length
  
Primer GC Content (%)
  
Start Position
  
End Position
  
Primer Direction
  
ΔG (cal)
  
Primer first used